I was thinking about ordering one of these and was curious if anyone has experience or owns one of these and what they think of them? Also it asks what side( port or starboard) the trolling motor is mounted on.  Mine is mounted on the front with the prop haning over the starboard side while the powerhead lays to the port side. So would that mean the trolling motor in on the port side?

Can't vouch for any experience with the cover, but the side the tm is on is dictated by which side the mounting plate is attached. Since yours is on the port side then yes it would be a port side mount.